Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX251251: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-223558' containing sample 'Escherichia coli HVH 27 (4-7449267)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.3M spots, 877.6M bases, 442.5Mb downloads

UUID: 3a24c9b7-7210-4c53-8a1c-477906ddc218

Design: Illumina sequencing of Escherichia coli HVH 27 (4-7449267) via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186060 • SRP019554 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli HVH 27 (4-7449267)

SAMN01885690 • SRS402167 • All experiments • All runs

Organism: Escherichia coli HVH 27 (4-7449267)

Library:

Name: Pond-223558

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 290772.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VYA7

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30651

research_project: RP-192

root_sample_id: SM-2TCXD

sample_id: SM-3VYA7

work_request: 35213

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-08 22:34:25.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 4.3M spots, 877.6M bases, 442.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR784985	2,171,765	438.7M	221Mb	2013-03-18
SRR784986	2,172,621	438.9M	221.4Mb	2013-03-18

ID:: 351175

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